Wrapper to read fast5 and pod5 files.
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Updated
Mar 6, 2024 - Python
Wrapper to read fast5 and pod5 files.
The first work to provide a comprehensive survey of a prominent set of algorithmic improvement and hardware acceleration efforts for the entire genome analysis pipeline used for the three most prominent sequencing data, short reads (Illumina), ultra-long reads (ONT), and accurate long reads (HiFi). Described in arXiv (2022) by Alser et al. https…
Wrapper to read fast5, slow5, blow5 and pod5 files.
Documentation for the https://github.com/JannesSP/read5 repository
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
Rust library to support interacting with Oxford Nanopore POD5 files
Synchronise Nanopore reads with a server.
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
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