Basic seed-and-extend DNA sequence read aligner
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Updated
Jul 12, 2018 - C++
Basic seed-and-extend DNA sequence read aligner
Combinatorial algorithms in bioinformatics - Searching motifs in biological sequences
FASTA file processor is a CMake Project written in modern C++ and designed to take advantage of the new C++17 standard. It is designed to read and write FASTA files quickly and efficiently, and it can be used as a library or a stand-alone program. The project comes with a set of tests using the Catch2 framework.
toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
Vim-like program for viewing genetic sequences on the command line (ncurses).
A fast version of the EMBOSS wordcount utility
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
A package for fast genomic sequences manipulation or interrogation
Alignment-Free phylogenetic tree construction from .fasta sequence files
C++ compressed FASTA sequence cache backed by the combined video memory of system to decrease RAM usage.
Grouped Read Unifier and Mapping Optimiser, a prototype pseudoaligner, that unifies reads by shared common transcripts, and quantifies read abundance.
Letter set generator and sequencer read simulator
Parallel aligner (Needleman–Wunsch) for nucleotide sequences (.fasta) with similarity heuristic filter.
Unix-style text manipulation tools for biological sequence data.
Split a multifasta file into many fasta files containing a single sequence, or extract a list of sequences/contigs. Supports compressed input and output files.
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