ImageJ macros and scripts written at the imaging facility MRI
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Updated
Oct 4, 2024 - Jupyter Notebook
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
ImageJ macros and scripts written at the imaging facility MRI
"ça y est j'ai une idée! non deux, trois, oh lala, oh lala j'ai plein d'idées..."
SMA is an ImageJ macro to automate the analysis of muscle architecture from B-mode ultrasound images.
Example scripts and macro for scripting with the ACQUIFER Java API
ImageJ macro for image annotations
Create random points in binary image and calculate number of points in objects of interest and distance to object of interest
ImageJ macro to plot line profiles in up to 7 colours
ImageJ functions and macros for working with thermal image files
This repository contains a Fiji (ImageJ) macro designed to evaluate leaf damage area.
quantixed FIJI update site + more
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
A FIJI macro to automate merge, crop/resize and projection z
FIJI/Image J macros created by NOBIC staff for microscopy facilities users
Collection of scripts and macros to implement robustness analysis into strain characterisation
Collection of macros for image processing in Fiji/ImageJ
ImageJ/Fiji macro that crops any given image stack without having to load it into memory first.
FIJI macros for Enrichment Analysis
Fiji macro that splits and merges multi-dimensional TIFFs.