Java toolkit for multi-threaded preprocessing of extremely large .fastq files in the GBS Pipeline by demultiplexing, filtering, and trimming sequenced DNA.
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Updated
Dec 6, 2018 - Java
Java toolkit for multi-threaded preprocessing of extremely large .fastq files in the GBS Pipeline by demultiplexing, filtering, and trimming sequenced DNA.
pipeline to perform gbs and genetic fitness analysis
Snake Genotyping By Sequencing. A reimplementation of Fast-GBS using snakemake.
A set of job submission scripts to run STACKS (http://catchenlab.life.illinois.edu/stacks/) on a computer cluster with TORQUE/MAUI scheduler. All the files were used to generate GBS data analyses published on the manuscript
Small .gbs chiptune player for Linux and Windows
Modul 152 Multimediainhalte in Webauftritt integrieren
Translation project for Them's Fightin' Herds
grur: an R package tailored for RADseq data imputations
Code used for a RADseq/GBS (or, more generally, reduced representation sequencing) optimization pilot experiment with several Antarctic animal species.
Python scripts for performing bioinformatics for small read sequence alignment to reference genomes and SNP marker calling.
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