Full results to accompany Zhu and Stephens (2018).
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Updated
Mar 28, 2019 - R
Full results to accompany Zhu and Stephens (2018).
Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
A resource of gene expression signatures derived from the DEE2 dataset (http://dee2.io)
Tools to prepare and analyze a priori molecular signatures, such as gene sets.
muleaData is an ExperimentHubData Bioconductor package for the mulea R package
Package to calculate functional similarity between genes https://biocor.llrs.dev
Ready-to-use curated genesets for cinaR
💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center …
Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.
Experimental version of data package associated with chipenrich
Gene sets and functions for working with them.
Code and resources related to the olfactory regeneration project
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
R wrapper for ermineJ
Lightweight Iterative Gene set Enrichment in R
MSigDB gene sets for multiple organisms in a tidy data format
Evolutionary Transcriptomics with R
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
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