Evolutionary Transcriptomics with R
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Updated
May 26, 2024 - R
Evolutionary Transcriptomics with R
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
Tools to prepare and analyze a priori molecular signatures, such as gene sets.
Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.
Package to calculate functional similarity between genes https://biocor.llrs.dev
muleaData is an ExperimentHubData Bioconductor package for the mulea R package
💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center …
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
Experimental version of data package associated with chipenrich
MSigDB gene sets for multiple organisms in a tidy data format
R wrapper for ermineJ
Lightweight Iterative Gene set Enrichment in R
Ready-to-use curated genesets for cinaR
A resource of gene expression signatures derived from the DEE2 dataset (http://dee2.io)
Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
Full results to accompany Zhu and Stephens (2018).
Code and resources related to the olfactory regeneration project
Gene sets and functions for working with them.
Add a description, image, and links to the gene-sets topic page so that developers can more easily learn about it.
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