Empirical intron annotation for Loxodes magnus genome assembly
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Updated
Oct 25, 2023 - Python
Empirical intron annotation for Loxodes magnus genome assembly
Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte
Viral genome assemble and characterisation
tair id to pubmed links for articls, genes, annotations, locus tag.
Backup an apollo instance to a git repository
analyzer for phytozome gff files and pacid for genes.
a miniprot alignments analyzer for protein alignments to draft genomes.
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
Bacterial plasmid annotation pipeline
analyzing bacterial genome based ontologies and phylogenomics informativeness
genome annotation analyzer for the microbiome analysis
intergenic region analyzer from protein alignments to draft genomes.
Toolkit for handling genome annotations in various formats. Python3.
Custom python scripts useful for working with genome assemblies and annotations
transdecoder predictions analyzer for pygenomeviz, mauve.
protein-annotator python package for analyzing protein alignments to draft genomes.
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