A Genome assembler based on greedy and genetic algorithms written in Go [golang.org]
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Updated
Aug 24, 2015 - Python
A Genome assembler based on greedy and genetic algorithms written in Go [golang.org]
From second generation sequencing reads to annotated bacterial genome
an attempt to incorporate BLASTp into BUSCO
an investigation into the efficiency of Trinity transcriptome assemblies
Hierarchical scaffold/assembly graph web visualization tool. As of August 9, 2017, the official repository for this has moved to MarBL! Use that repository instead :)
This pipeline will check assembly and annotations based on gene families.
Python script for comparing two genome assemblies
Lift same species genome co-ordinates from one assembly to another
Visualize read-to-contig alignment during assembly analysis
Genome Assembly Analysis Framework
snakemake long read assembly pipeline
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
[Obsolete] Trying to assemble centromere sequences (of Drosophila for now; hopefully any species in the future)
scripts associated with yam genome assembly
Implementacja rozwiązania problemów z platformy: http://rosalind.info/problems/list-view/. Nazwa zadania z rosalinda jest nazwą programu. Opis zadań znajduje się na platformie rosalind.
Iterative Organellar Genome Assembly
Coding problems from course 2 of the Bioinformatics specialization
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
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