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genomics-analysis

Here are 10 public repositories matching this topic...

jessicabonnie / dandd

Tool to estimate deltas for sequence sets and answer questions about relative contribution

genomics similarity-measures sequence-analysis genomics-analysis

Updated Feb 12, 2024
Python

epifluidlab / FinaleToolkit

FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

bioinformatics genomics computational-biology cfdna epigenomics cell-free-dna bioinformatics-tool fragmentomics genomics-analysis

Updated Oct 13, 2024
Python

mrdanieleze / Genomic-Sequence-Comparison-Code-GSCC-

This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!

bioinformatics computational-biology python3 biopython rna-sequencing dna-sequences sequence-alignment bioinformatics-scripts genomic-data-analysis pairwise-alignment bioinformatics-tool genomics-analysis

Updated Mar 19, 2024
Python

luisagmazuca / Post-Genomics

This repository contains the file codes used to complete the final project for the course Post Genomic Analysis.

cancer statistical-analysis aml genomics-data genomics-analysis

Updated Dec 9, 2022
Python

Orpowell / NLR-Assembler

NLR-Assembler is a command line tool for improving RenSeq Assemblies using linked-read sequencing by 10x Genomics.

bioinformatics-pipeline bioinformatics-tool plant-genomics genomics-analysis

Updated Aug 2, 2023
Python

sivkri / Deseq2-Annotated-Data-Processing

Filter DE genes based on log2Folchange, FDR value or both

bioinformatics statistics genomics data-processing fdr data-filtering fdr-benjamini genomics-analysis

Updated Jun 9, 2023
Python

LoganXav / GenomicsDnaToolkit

A class of utilities for processing DNA sequencing reads in computational genomics

python bioinformatics sequencing computational-biology genomics-analysis

Updated Jul 1, 2024
Python

JordyCoolen / RC-PCR_CLASSIFIER

Reverse Complement PCR (RC-PCR_ Classification pipeline.

bioinformatics bioinformatics-pipeline 16s 16s-rrna genomics-analysis

Updated Sep 14, 2022
Python

zbates1 / zb-deepmind-terminator

Using NVIDIA Deepmind's Nucleotide Transformer to generate embeddings for yeast genomes.

deep-learning yeast genomics-analysis

Updated Nov 27, 2023
Python

lajd / Genomic-Data-Science-JHU

Genomics data science specialization (John Hopkins University)

data-science genomics coursera johns-hopkins-university genomics-analysis

Updated Apr 23, 2022
Python

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