🌲 a flexible gene expression simulator with codon-specific translation rates
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Updated
Dec 20, 2022 - C++
🌲 a flexible gene expression simulator with codon-specific translation rates
Efficient discrete random distribution for C++. The implementation uses array-based sum tree to allow fast sampling and updates of weighted events.
Stochastic simulation of CRISPR nucleases cleaving a pool of DNA or RNA
Implementation of TASEP with reinitiation and particles of arbitrary size.
Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics
A simulation of the propagation of a virus using the Gillespie algorithm
A collection of some handy utilities
Network approach to simulate epidemic infection in a bus - station system
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