🌲 a flexible gene expression simulator with codon-specific translation rates
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Updated
Dec 20, 2022 - C++
🌲 a flexible gene expression simulator with codon-specific translation rates
Efficient discrete random distribution for C++. The implementation uses array-based sum tree to allow fast sampling and updates of weighted events.
Implementation of TASEP with reinitiation and particles of arbitrary size.
Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics
Stochastic simulation of CRISPR nucleases cleaving a pool of DNA or RNA
Network approach to simulate epidemic infection in a bus - station system
A simulation of the propagation of a virus using the Gillespie algorithm
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