A novel bioinformatics pipeline for recent horizontal gene transfer detecting.
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Updated
Nov 13, 2018 - Python
A novel bioinformatics pipeline for recent horizontal gene transfer detecting.
Cemracs 2018 project (CIRM, July-August 2018)
A simulator for horizontal gene transfer (HGT) in microbial communities
An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
Horizontal gene transfer (HGT) identification pipeline
Rapid and simple taxonomic profiling of genome and metagenome contigs
HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
TrIdent- Transduction Identification: Automatic detection, classification and characterization of active transduction events in microbiomes.
codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
Automatic evaluation of HGTs
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