ImageJ
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Here are 58 public repositories matching this topic...
ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)
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Feb 13, 2017
ImageJ macros that automate the workflow of thresholding and analyzing the size and intensity of objects/regions in microscope images.
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Mar 24, 2017
[ImageJ] A repository for useful custom imagej macros.
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Jul 19, 2017 - Python
A short macro to generate an image with randomly positioned "fluorescent" single molecules
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Nov 13, 2017
ImageJ / Fiji macro to automatically correct white balance in RGB images
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Nov 13, 2017
ImageJ macro for calculation of nuclear to cytoplasmic ratio
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Mar 1, 2018
A set of macros for processing images with ImageJ. Designed for my workflow, but can be adapted for use with others.
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Mar 23, 2018
Repository with EPmacroJ (Endoost Periost macro for imajeJ) for bone moments measurements based on Jenis Hopkins original MomentMacroJ_v1.4B. Software published in Sládek V. et all: Effect of deriving periosteal and endosteal contours from microCT scans on computation of cross-sectional properties in non-adults: the femur. J Anat. 2018 May 31.
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Aug 13, 2018
🔬 NoiSee: An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.
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Sep 6, 2018 - Python
A repository containing ImageJ macros for the Snyder Lab
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May 10, 2019 - Python
A imageJ macro to refine my hematoxylin/eosin stains for islets of Langerhans in pancreas sections
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Oct 21, 2019
ImageJ macro script that quickly generates a variety of data from 2D micrographs.
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Feb 9, 2020
This repository is to share ImageJ/FIJI codes for post-processing images from FLEXIE microscope
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Mar 22, 2020
Visual ImageJ Macro editing in a node-base editor featuring ImageJ
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Mar 28, 2020 - Java
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