Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
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Updated
Feb 21, 2024 - Python
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
Read and write TIFF files
Read and write ImageJ ROI format
Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.
An interactive image processing program for biologists written in Python.
A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
This is an implementation of NeuronJ work with python.
ImageJ scripts for stereology and morphometry
Scripts for executing Fiji plugin BoneJ in headless mode in Python to compute bone microstructure metrics
This directory contains all the elements and structure of the napari-aphid plugin
Connect Napari with FIJI/ImageJ
Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.
Fiji/ImageJ plugin to help measuring linear distances.
A repository containing ImageJ macros for the Snyder Lab
🔬 NoiSee: An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.
A Python script that uses Python libraries, ImageJ, and ImageMagick to automatically convert a scanned PDF with two A4 pages, into a single A3.
MRI ImageJ related python (jython) module.