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immunology

Here are 28 public repositories matching this topic...

Ong-Research / WISC_WFS_Rhinovirus

high-dimensional-data immunology peptides science-research

Updated Jun 2, 2024
R

PaulRegnier / PICAFlow

PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.

clustering cluster immunology transformation cluster-analysis clustering-algorithm fcs cytometry normalization fcs-files immunological-bioinformatics downsampling cytometry-data cytometry-analysis-pipeline immunological-data

Updated May 31, 2024
R

Japrin / sscClust

simpler single cell RNAseq data clustering

bioinformatics genomics clustering immunology single-cell

Updated May 22, 2024
R

IgGeneUsage

snaketron / IgGeneUsage

Comparison of gene usage in immune repertoires under different biological conditions

immunology high-throughput-sequencing immunoglobulin differential-gene-expression immunoinformatics differential-analysis vdj-recombination tcr-repertoire immune-repertoires immunological-bioinformatics immunogenomics immune-repertoire bcr-repertoire immune-repertoire-analysis b-cell-receptor

Updated Apr 20, 2024
R

snaketron / ClustIRR

Clustering of immune receptor repertoires

bioinformatics clustering immunology t-cell-receptor rep-seq immunoinformatics quantitative-methods b-cell-receptor repertoire-analysis

Updated Apr 17, 2024
R

immunomind / immunarch

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

Updated Apr 9, 2024
R

RGLab / ImmuneSpaceR

An R Interface to the ImmuneSpace database portal

bioconductor immunology labkey immunespace immport hipc

Updated Nov 28, 2023
R

rnabioco / djvdj

An R package to analyze single-cell V(D)J data

immunology immunoinformatics single-cell-rna-seq vdj

Updated Nov 13, 2023
R

Nikhilesh-Vasanthakumar / Analysis_of_sex_differences_in_pDCs_BINP37

Studying the sex differences in the immune response of plasmacytoid dendritic cells (pDCs) under different treatment conditions.

bioinformatics immunology immunoinformatics immune-system pseudomonas-aeruginosa sex-differences plasmacytoid-dendritic-cells

Updated Jun 12, 2023
R

jasminesmn / ABPEPserver

ABPEPserver is an online database and analytical platform that offers the visualization of a large-scale tumour proteomics analysis of Substitutant expression across multiple tumour types.

cancer immunology peptides neoantigens

Updated Dec 15, 2022
R

sanketrane / B_cells_FM_GC

https://www.sciencedirect.com/science/article/pii/S2211124720313656

modeling immunology bayesian-inference mathematical

Updated Nov 20, 2022
R

CompMethods-ICTP-SAIFR-Serrapilheira / CBA

Final project computational methods: Analysis of cytokines IFN-γ, IL-2, IL-4, IL-5, IL-6, IL-10 and TNFα levels in different groups. Status: finished

immunology cytokines microcephaly

Updated Aug 18, 2022
R

andrewrech / antigen.garnish

machine-learning bioinformatics immunology peptides immunoinformatics

Updated Jul 7, 2022
R

swanson-lab / VH12-Sequencing

Code and scripts used for Worth et al. 2022: "Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice".

r ngs immunology rep-seq ngs-analysis vdj-recombination ngs-pipeline b-cell immcantation transgene b-cell-receptor mus-musculus

Updated May 24, 2022
R

Jami-Erickson / scRNAseq_CD8Tcells_CMV

Code for Erickson et al., Competition but not cross-competition shape the CD8+ T cell response in transplant patients following cytomegalovirus reactivation.

immunology cmv single-cell-rna-seq

Updated Apr 16, 2022
R

arnaud00013 / SARS-CoV-2-HPDA-evolutionary-analysis

This repository contains a script for analyzing SARS-CoV-2 evolution in epitopes during the first two waves of the COVID-19 pandemic. The immunological data come from a high protein density array analysis of SARS-CoV-2 epitopes in 15 patients (N'Guessan A. et al., 2022). This script and the related data can be updated manually to integrate data …

evolution transmission delta selection immunology omicron within-host sars-cov-2 immune-escape variants-of-interest variants-of-concern

Updated Feb 15, 2022
R

cancerbits / shahin2021_ikzf2_het

Code repository accompanying the paper by Shahin et al. (2021), Blood Adv

bioinformatics scrna-seq immunology rare-disease

Updated Jan 28, 2022
R

cancerbits / shahin2021_ikzf2

Code repository accompanying the paper by Shahin et al. (2021), Sci. Immunol.

bioinformatics scrna-seq immunology rare-disease

Updated Nov 26, 2021
R

CRI-iAtlas / shiny-iatlas

An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app

genomics cancer systems-biology immunology

Updated Feb 26, 2021
R

nickmmark / immune-phenotyping

Immune cell phenotyping of lung cancer and lung tissue using PCA, tSNE, and other techniques

data-science bioinformatics clustering immunology immunoinformatics unsupervised-machine-learning

Updated Feb 26, 2021
R

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