Open Source python module to enable batch gold particle picking, filtering, processing & statistical modelling of TEM images produced by IGEM (immunogold electron microscopy).
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Updated
Jul 31, 2018 - Jupyter Notebook
Open Source python module to enable batch gold particle picking, filtering, processing & statistical modelling of TEM images produced by IGEM (immunogold electron microscopy).
A binding-reaction model for the common gamma chain receptor cytokines.
Code for Erickson et al., Competition but not cross-competition shape the CD8+ T cell response in transplant patients following cytomegalovirus reactivation.
Project on agent-based simulations for the GPU. My final year dissertation project co-supervised by Fiona Polack (Keele University) and Kieran Alden (University of York) with additional support provided by Richard Paige (UoY).
This repository contains a script for analyzing SARS-CoV-2 evolution in epitopes during the first two waves of the COVID-19 pandemic. The immunological data come from a high protein density array analysis of SARS-CoV-2 epitopes in 15 patients (N'Guessan A. et al., 2022). This script and the related data can be updated manually to integrate data …
Work done during rotation with Coleen McNamara & Stefan Bekiranov in UVA BIMS PhD program
LZ76 Graphs and Applications in Immunology
Code, text, figures, etc. for reproducing my dissertation proposal, "Impact of Host and Vaccine Characteristics on Immune Responses following Influenza Vaccination".
Incredible Deep Learning in immunooncology with Pytorch - workshop at AIRR Community Meeting IV
R scripts I generated for my capstone project.
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
Data portal and API for Center for Viral Systems Biology (CViSB) data
ABPEPserver is an online database and analytical platform that offers the visualization of a large-scale tumour proteomics analysis of Substitutant expression across multiple tumour types.
SARS-CoV-2 Peptide Vaccine, Gen 10
This is the repository for scripts used in Nicolet et al., 2021 on the study of cytotoxic CD4+ T cells.
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