dna/rna alignment classifier
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Updated
Dec 12, 2023 - Python
dna/rna alignment classifier
A program to read sequences from fastq file and find out the frequency of all substrings with length k across all sequences in the file.
Counts the number of occurrences of each k-mer in a DNA string
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
fast and lightweight counting of short k-mers
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