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Nov 15, 2023 - Python
kmer-counting
Here are 8 public repositories matching this topic...
dna/rna alignment classifier
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Dec 12, 2023 - Python
fast and lightweight counting of short k-mers
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Sep 30, 2022 - Python
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
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Mar 28, 2022 - Python
Counts the number of occurrences of each k-mer in a DNA string
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Jan 25, 2022 - Python
A program to read sequences from fastq file and find out the frequency of all substrings with length k across all sequences in the file.
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Jan 23, 2021 - Python
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