Java API for the extraction and management of MIAPE documents from standard proteomics data files
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Updated
Aug 23, 2023 - Java
Java API for the extraction and management of MIAPE documents from standard proteomics data files
MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.
Web application and REST Api for parsers for the Grammars on succinct lipid nomenclature (Goslin).
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High performance io library for proteogenomics
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Filter MzIdentML according to a delimited text file and inject custom `userParam` entries into it.
Program used in combination with mgfToBinStack to import data from Mascot to be used in QuiXoT by converting Mascot's DAT files into QuiXML files.
Java implementation of the latest shorthand nomenclature.
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This repo contains the Repository for PRIDE mongo Database
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Metabolomics Standards Initiative Ontology
PTM Identification and Quantification Engine from DIA
JAVA-based implementation of LuciPHOr that can process any variable PTM.
DeltaMass: view and interrogate open proteomics search data
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