Java API for the extraction and management of MIAPE documents from standard proteomics data files
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Updated
Aug 23, 2023 - Java
Java API for the extraction and management of MIAPE documents from standard proteomics data files
MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.
JAVA-based implementation of LuciPHOr that can process any variable PTM.
This repo contains the Repository for PRIDE mongo Database
Filter MzIdentML according to a delimited text file and inject custom `userParam` entries into it.
Program used in combination with mgfToBinStack to import data from Mascot to be used in QuiXoT by converting Mascot's DAT files into QuiXML files.
Implementation, development, and evaluation of algorithms for the detection and extraction of isotope pattern of a mass spectrometric measurement.
Web application and REST Api for parsers for the Grammars on succinct lipid nomenclature (Goslin).
High performance io library for proteogenomics
Analyze possible peptide fragments with peptide serum stability studies.
LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data
A cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, automated data processing and archiving, and unbiased instrument evaluation.
A Java and Python package to Predict Retention Times
Tools for rapid imaging analysis and visualisation of analytical data (mass spectrometry, optical emission spectroscopy, µXRF, ...)
Java implementation of the latest shorthand nomenclature.
Metabolomics Standards Initiative Ontology
DeltaMass: view and interrogate open proteomics search data
PTM Identification and Quantification Engine from DIA
PepQuery: a targeted peptide search engine
Tripoli imports raw mass spectrometer data files and supports interactive review and archiving of isotopic data. Tripoli facilitates visualization of temporal trends and scatter during measurement, statistically rigorous filtering of data, and calculation of statistical parameters.
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