LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data
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Updated
Feb 1, 2017 - Java
LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data
Program used in combination with mgfToBinStack to import data from Mascot to be used in QuiXoT by converting Mascot's DAT files into QuiXML files.
Analyze possible peptide fragments with peptide serum stability studies.
PTM Identification and Quantification Engine from DIA
Filter MzIdentML according to a delimited text file and inject custom `userParam` entries into it.
Mass spectrometry data visualization
DeltaMass: view and interrogate open proteomics search data
A cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, automated data processing and archiving, and unbiased instrument evaluation.
Implementation, development, and evaluation of algorithms for the detection and extraction of isotope pattern of a mass spectrometric measurement.
JAVA-based implementation of LuciPHOr that can process any variable PTM.
This repo contains the Repository for PRIDE mongo Database
Metabolomics Standards Initiative Ontology
Java API for the extraction and management of MIAPE documents from standard proteomics data files
sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
High performance io library for proteogenomics
Tools for rapid imaging analysis and visualisation of analytical data (mass spectrometry, optical emission spectroscopy, µXRF, ...)
Web application and REST Api for parsers for the Grammars on succinct lipid nomenclature (Goslin).
MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.
A Java and Python package to Predict Retention Times
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