Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
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Updated
Jun 26, 2024 - R
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
Infer metabolic directions from moment differences of mass-weighted intensity distributions
R package to Import and Modify SVG (XML) Graphic Files
An R library for conducting analyses on COMPASS data.
IsoSim: stoichiometric, kinetic and isotopic modeling of metabolic systems
An R package to incorporate in a continuous way the gene-expression data as FBA flux boundaries in a metabolic model. Also, functions to calculate and plot the differences between model fluxes in different metabolic scenarios was included. This is an implementation of the algorithm described by Lee et al. (2012) in DOI: 10.1186/1752-0509-6-73.
Agent-based metabolic modelling of microbial communities in time and continuous µ-meter-scale space
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
An R package to identify orphan metabolites and evaluate the mass and charge balance of stoichiometric reactions. The package also includes functions to characterize and write models in TSV and SBML formats, extract all reactants, products, metabolite names and compartments from a metabolic reconstruction.
Automatic fitting of growth models to growth data
Flux response of Pseudomonas putida to increased levels of metabolic burden
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
Project to study proliferation and metabolic liabilities across several thousand cancer samples.
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