Serves as the backend code for https://www.curatemetabolicpathways.com

prepBioCyc: Preprocess BioCyc files

scCellFie, inspired by the MATLAB-based CellFie tool, offers advanced analysis of metabolic functions on Python using single-cell and spatial transcriptomics. Efficient and user-friendly, it integrates with Scanpy to extend CellFie's capabilities, enabling in-depth single-cell and spatial metabolic task analysis.

reMap: relabeling metabolic pathway data with groups to improve prediction outcomes

Web application of metabolics pathway visualisation, for the Gencovery business (https://gencovery.com/), created during the PDP project during the M1 of the Master of Bioinformatics, in Bordeaux.

Library to perform metabolic engineering tasks

Code and data repository for Modeling Metabolic Fluxes Using Deep Learning Based on Enzyme Variations

MNXref: Reconciliation of metabolites and biochemical reactions for metabolic networks

a BIGG slint interface which will give you all the information associated with the metabolic model

A basic network of human metabolism, including key enzymes, intermediates, and hormonal influences

a metabolic json parser and streamlit for BIGG database

Identifying reprogrammed metabolic routes given omics data.

leADS: improved metabolic pathway inference based on active dataset subsampling

Metabolic pathway inference using non-negative matrix factorization with community detection

Diversity-based enumeration of optimal context-specific metabolic networks

CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)

Pipeline plugins for PALADIN, providing HPC support, abundance (taxonomy, go terms), customized reports, etc

PathVisio plugin to find relevant metabolic reactions from Rhea

Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL