metabolic-reconstruction

Here are 6 public repositories matching this topic...

opencobra / cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

tutorial metabolomics reconstruction transcriptomics cobra metabolic-models strain-engineering metabolic-reconstruction constraint-based-modeling microbiome-analysis metabolic-engineering gap-filling cobra-toolbox omics-data-integration human-metabolism

Updated Nov 7, 2024
MATLAB

SysBioChalmers / RAVEN

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The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

systems-biology metabolic-models metabolic-reconstruction constraint-based-modeling metabolic-engineering gap-filling human-metabolism genome-scale-models sysbio

Updated Nov 14, 2024
MATLAB

SysBioChalmers / Yarrowia_lipolytica_W29-GEM

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Genome-scale model of Yarrowia lipolytica.

systems-biology stoichiometric-reactions metabolic-models metabolic-network metabolic-reconstruction constraint-based-modeling metabolic-engineering omics-data-integration yarrowia-lipolytica genome-scale-models

Updated Jul 30, 2021
MATLAB

MetExplore / dexom

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Diversity-based enumeration of optimal context-specific metabolic networks

optimization metabolism metabolic-network metabolic-reconstruction constraint-based-modeling metabolic-engineering cobra-toolbox omics-data-integration metabolic-pathways

Updated Jul 2, 2021
MATLAB

sriram-lab / egem

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epigenome scale metabolic modeling for cancer metabolism

metabolic-models metabolic-reconstruction epigenomics cancer-metabolism genome-scale-modeling histone-ptms histone-acetylation drug-sensitivity

Updated Apr 16, 2022
MATLAB

SysBioChalmers / rhto-GEM

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Genome-scale metabolic model of Rhodotorula toruloides

systems-biology yeast metabolic-reconstruction constraint-based-modeling metabolic-engineering genome-scale-models sysbio

Updated Apr 19, 2020
MATLAB

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metabolic-reconstruction

Here are 6 public repositories matching this topic...

opencobra / cobratoolbox

SysBioChalmers / RAVEN

SysBioChalmers / Yarrowia_lipolytica_W29-GEM

MetExplore / dexom

sriram-lab / egem

SysBioChalmers / rhto-GEM

Improve this page

Add this topic to your repo