CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
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Updated
Nov 8, 2021 - Python
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
Metabolic pathway inference using non-negative matrix factorization with community detection
streamlit application for metabolic json from BIGG modelling database.
Tool for the reconstruction of context-specific metabolic models based on omics data from several sources
Chemical reaction balancing web service
Enzymatic Link Prediction
A pathologic file generator (PLFG) is implemented to assist and facilitate the curation progress of every computationally predicted pathway genome database (PGDB).
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
KEGG Module Evaluation Tool
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
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