An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
-
Updated
Jun 17, 2024 - Python
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
KEGG Module Evaluation Tool
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
Tool for the reconstruction of context-specific metabolic models based on omics data from several sources
Metabolic pathway inference using non-negative matrix factorization with community detection
streamlit application for metabolic json from BIGG modelling database.
Chemical reaction balancing web service
Enzymatic Link Prediction
A pathologic file generator (PLFG) is implemented to assist and facilitate the curation progress of every computationally predicted pathway genome database (PGDB).
Add a description, image, and links to the metabolic-reconstruction topic page so that developers can more easily learn about it.
To associate your repository with the metabolic-reconstruction topic, visit your repo's landing page and select "manage topics."