Database generation scripts for metagenome analysis tools used within MGX
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Updated
Oct 31, 2023 - Perl
Database generation scripts for metagenome analysis tools used within MGX
The MG-RAST Backend -- the API server
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
Silva OTU count table merger
A workflow tool to automatically run a bioinformatic pipeline
MetaCRAST: reference-guided CRISPR detection in metagenomes
Init of of metagenomics + metatranscriptomics + taxonomy + metabolism into graphDB
A pipeline for construction and graphical visualization of annotated pangenome networks.
This is a project aimed at building a compute resource with remote access, for metagenomics analysis.
Scalable Metagenomics Pipeline: Metagenome analysis including full metagenome assembly
My CAMERA metagenomic annotation pipeline code as featured in "The JCVI standard operating procedure for annotating metagenomic shotgun sequencing data" and the "JCVI HMP metagenomic pipeline"
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