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biom-format

Here are 5 public repositories matching this topic...

smdabdoub / kraken-biom

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

bioinformatics taxonomy metagenomics biom-format kraken taxonomic-classification

Updated Mar 22, 2022
Python

molbiodiv / biojs-io-biom

Parses biom files

bioinformatics biom-format biojs

Updated Dec 6, 2022
JavaScript

smdabdoub / clark-biom

Create BIOM-format tables (http://biom-format.org) from CLARK output (http://clark.cs.ucr.edu/) for use with downstream tools such as UniFrac, iTol (itol.embl.de), or PhyloToAST (phylotoast.org), PhyloToAST (http://phylotoast.org).

bioinformatics taxonomy metagenomics biom-format clark taxonomic-classification

Updated Apr 10, 2018
Python

molbiodiv / biom-conversion-server

Conversion tool for the biom format via php webservice

bioinformatics biom-format

Updated Oct 4, 2018
PHP

stheil15 / biom2metaphlan

metagenomics biom-format

Updated Aug 2, 2018
Perl

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