Automatic classification of bacterial species using Gram-stained images
-
Updated
Apr 14, 2019 - R
Automatic classification of bacterial species using Gram-stained images
An R package to help you PLAying with your genomic DAta.
MetaGEN - an all-in-one solution for streamlined metagenomic analyses
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
Microbial fitness inference from barcode counts.
ECCMID 2024 Abstract #04375. Code used to perform the analysis and figures.
Designing synthetic bacterial communities for predictable plant phenotypes
Various sets of tools, functions and the like that I will be using for my MSc. Feel free to fetch what you need or be inspired.
Machine learning classification pipe-line used for the study "Long-term life history predicts current elderly gut microbiome"
Methods and data to reproduce the investigation on the adaptive trait found in the genes of the methane oxidation metabolic module of type Ia methanotrophs
This repository provides a GUI app for phenotype assays analysis from raw data to chemoinformatics.
Tools for extracting information from OD600 and pH curves
PAPi (Pangenome Analysis Pipeline)
dar: runs multiple differential abundance analysis methods and through a consensus strategy returns a set of differentially abundant features.
This repository collects material (code, presentation, images, test data) prepared for the webinar series of the Excalibur H2020 Training
Portfolio in R
Optimal Experiment Design of microbial inactivation experiments
CFU calculator based on NCIMS 2400s SOPs.
Microbiome Amplicon Analysis and Visualization
Add a description, image, and links to the microbiology topic page so that developers can more easily learn about it.
To associate your repository with the microbiology topic, visit your repo's landing page and select "manage topics."