OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network

myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry

NAnostring quality Control dasHbOard

analyze isomiRs from seqbuster tool

Off-target analysis of siRNA knock down paired with RNAseq

A set of tools for scanning for miRNA binding sites and working with affinity models

Analyze single-cell miRNA sequencing data from HL-60 cells along a 7-day time-course of ATRA treatment.

Identification and analysis of miRNA sponge regulation

Simulation of interactions miRNA:Competing Targets

CmiRClustFinder v1.0: a tool for identification of CNV co-locolized miRNA, miRNA clusers and genes in TCGA cancer cohorts.

BOVINE-circQTL is a code repository for the pipeline of circQTL identification and downstream analysis in bovine muscle tissue.

Characterization of small RNA pathways

An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer

Inferring ncRNA synergistic competition

CMTCN: A web tool for investigating cancer-specific microRNA and transcription factor co-regulatory networks

R package for designing miRNA primers.

Simple to use package for OMICS data analysis (featuring limma, WGCNA, GSEA)

miRinGO: Prediction of GO terms indirectly targeted by human microRNAs

Efforts to relate miRNA from blood to clinical variables from alcoholic hepatitis