Dockerfile to create a docker image containing open source mritools for data handling, reconstruction and post-processing
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Updated
Nov 18, 2018 - Shell
Dockerfile to create a docker image containing open source mritools for data handling, reconstruction and post-processing
Docker container for FiberNavigator for Brainlife.io
Pipeline and tools to preprocess MR data
Scripts related to "White Matter Microstructure in Attention-Deficit/Hyperactivity Disorder: A Systematic Tractography Study in 654 Individuals"
Scripts related to "Associations between attention-deficit hyperactivity disorder (ADHD) symptom remission and white matter microstructure: A longitudinal analysis"
Quick script that uses dcm2niix to convert MRI DICOM files into NIFTI files for easier use. Created within the Dynamic Brain & Mind Lab @ Drexel University.
Code snippets for preprocessing DTI/MRI neuroimaging data
SVRTK packaged as a MONAI Application Package (MAP), including for deployment on AIDE
A simple script to deface (with use of fsl_deface) multiple T1/T2-weighetned files prepared according to the BIDS standard.
Freesurfer processing for 3D brain printing
Various helper functions for processing MRI for MEG analysis
Brainlife App (wrapper) for dMRI based fiber tracking between ROIs using parallel transport tractography
Anonymization of freesurfer output based on metadata dropping and defacing.
Musiré – Multimodal simulation & reconstruction framework for the radiological imaging sciences
This is the official C-PAC (Configurable Pipeline for the Analysis of Connectomes) brainlife.io app. Currently this app runs either the default pipeline or one of our preconfigured pipelines.
runs AFNI's 3dQwarp function over a NIfTI file
3D print your brain from a T1 MRI image using Docker.
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