A code to generate atomic structure with symmetry
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Updated
Sep 22, 2024 - Python
A code to generate atomic structure with symmetry
Free and open-source code package designed to perform PyMEEP FDTD simulations applied to Plasmonics (UBA+CONICET) [Buenos Aires, Argentina]
The Otago Research Genetic Algorithm for Nanoclusters, Including Structural Methods and Similarity (Organisms) program is a genetic algorithm designed to globally optimise nanoclusters (also known as clusters or nanoparticles)
Python Code for Processing LAMMPS Data generated for two data types: LAMMPS trajectory file and LAMMPS dump files. Subsequently, the code involves post-processing of the data to give interfacial heat flux, temperature discontinuity and ultimately interfacial conductance using the atomistic nodal approach. Pythode code is also presented as a work…
"aggregate_gen" -- An efficient C++ code for generating fractal cluster of spheres
project about measuring size and shape of gold nanoparticles and nanorods and image segmantation
This is a computational exercise for learning about silver nanoprisms and why their colour is related to their diameter. Runs in Google Colab and uses Python3. Designed for high school students.
eNanoMapper TTL for ACS Nano paper
Depolarized Dynamic Light Scattering data analysis in python. Used to find aspect ratio of non-spherical nanoparticles using oblate, prolate, and cylinder methods.
C++ template library for Discrete Element Method (DEM) simulations
A molecular dynamics approach to study the permeation of nanoparticles through lipid bilayer
NanoTrackJ is an ImageJ/Fiji plugin to characterize the size of nanoparticles by its diffusion trajectories.
A Matlab code for tracking colloidal fluorescent nanoparticles.
PAR2 Activation and calcium signaling Reaction Model in PySB
Semi-supervised VAE for data with the rotational disorder
Paper on how to supress background while imaging gold nanorods through the use of the anti-Stokes emission.
This repository contains examples of genetic algorithm optimisations using the Organisms program that can be run on Jupyter. This can be run either on your computer or live on the web through Binder
The Nanocluster interpolation Scheme Program (NISP) is designed to perform an interpolation scheme that gives idea of the types of icosahedral, decahedral, and octahedral clusters that may exist at selected sizes.
Analyze two-component nanoparticle properties for classical molecular dynamics simulations
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