Scripts for processing and error correction of Nanopore reads generated by rolling circle amplification
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Updated
Apr 26, 2019 - Python
Scripts for processing and error correction of Nanopore reads generated by rolling circle amplification
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
A package for training strand-specific profile HMMs for primer sets from real Nanopore data
Simulation of Nanopore Sequencing Signals Based on BiGRU
Tools and software library developed by the ONT Applications group
High accuracy single molecule Nanopore reads using the MrHAMER pipeline
This is just small command line pipeline to simplify going from ONT Unbasecalled data using Guppy to Assembly using Flye, all of the tools are existing tools.
Ribosomal operon sequences database for mapping and taxonomy assignment
Training models for basecalling Oxford Nanopore reads
Official implementation of paper "Expanding the Molecular Alphabet of DNA-Based Data Storage Systems with Nanopore Readouts" (Nano Letters)
A long read nanopore genome assembly and error correction pipeline
Transcriptome long-read orientation with Deep Learning
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
Detecting methylation using signal-level features from Nanopore sequencing reads
Graph Convolution based model for de novo identification of nucleotide modifications
Consensus calling for Amplicon Nanopore Sequencing
A tool for Nanopore Amplicon Real-Time (NART) analysis.
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)
A repository to benchmark and automate genome assembly evaluation. Utilize scripts for Dragonflye with diverse polishing models on Illumina and Nanopore reads to fine-tune genome assemblies
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