nanopore
Here are 15 public repositories matching this topic...
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
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May 23, 2024 - C++
Pod5: a high performance file format for nanopore reads.
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Mar 25, 2024 - C++
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
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Feb 15, 2024 - C++
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
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May 18, 2023 - C++
ORI (Oxford nanopore Reads Identification) is a software allowing, from long nanopore reads, to identify the bacterial strains present in a sample.
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Apr 1, 2022 - C++
a set of tools for viral amplicon schemes
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Aug 17, 2021 - C++
A fast tool for hybrid genome assembly of long and short reads
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Apr 22, 2020 - C++
Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
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May 29, 2018 - C++
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