A header-only templated C++17-library for fast and versatile sequence alignment computations.
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Feb 28, 2020 - C++
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needleman-wunsch-algorithm
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Repositório para apresentação de código desenvolvido pelo grupo 3 para a UC Algoritmos para Análise Sequências Biológicas do Mestrado em Bioinformática, ano lectivo 23-24.
translation
string-manipulation
blast
dynamic-programming
orfs
motifs
needleman-wunsch-algorithm
phylogenetic-analysis
alignment-algorithm
recursion-algorithm
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Feb 29, 2024 - Jupyter Notebook
Programas usados em BioInformática
needleman-wunsch
transcription
debruijn
bioinformatics-scripts
needleman-wunsch-algorithm
needleman
debruijn-graph
ribosome
bioinformatica
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Nov 16, 2021 - Jupyter Notebook
MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.
smith-waterman
needleman-wunsch
global-alignment
sequence-alignment
needleman-wunsch-algorithm
local-alignment
smith-waterman-alignment
smith-waterman-algorithm
needleman-wunsch-alignment
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Jan 31, 2023 - C++
Bio informatics course materials for NEUB students.
bioinformatics
algorithm
needleman-wunsch
edit-distance
pdp
edit-distance-algorithm
bioinformatics-algorithms
needleman-wunsch-algorithm
dna-transcription
bio-informatics
smith-waterman-algorithm
edit-distance-algorithms
neub
partial-digest-problem
needleman-wunsch-alignment
edit-distance-algorithm-implementation
needleman-algorithm
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May 11, 2023 - C++
Longest Common Subsequence algorithm. Global Alignment is the Needleman Wunsche algorithm and the local alignment is Smith Waterman algorithm
smith-waterman
needleman-wunsch
backtracking
dynamic-programming
backtracking-algorithm
subsequence-matching
needleman-wunsch-algorithm
smith-waterman-algorithm
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Nov 22, 2023 - Python
A python implementation of the Needleman–Wunsch algorithm
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Jul 27, 2021 - Python
Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.
proteins
smith-waterman
amino-acids
global-alignment
sequence-alignment
pairwise
needleman-wunsch-algorithm
local-alignment
smith-waterman-alignment
needleman-wunsh
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Mar 4, 2019 - HTML
Global and Local Sequence Alignment
bioinformatics
smith-waterman
needleman-wunsch
global-alignment
needleman-wunsch-algorithm
local-alignment
smith-waterman-alignment
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Nov 30, 2020 - Python
Sequence Alignment Algorithms: Dot Matrix Representation, Needleman-Wunsch Algorithm, and Smith-Waterman Algorithm.
bioinformatics
needleman-wunsch
sequence-alignment
dot-matrix
needleman-wunsch-algorithm
smith-waterman-alignment
smith-waterman-algorithms
bioinformatics-field
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May 31, 2021 - Jupyter Notebook
Distributed Implementation Of Needleman Wunsch Algorithm using MPI
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Apr 15, 2019 - C
bioinformatics
dna
dynamic-programming
dna-sequences
needleman-wunsch-algorithm
dna-sequence-alignment
optimal-matching
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Aug 7, 2021 - Kotlin
An algorithm used in bioinformatics to align protein or nucleotide sequences. It was one of the first applications of dynamic programming to compare biological sequences.
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Oct 5, 2019 - Python
implementation and visualizations for sequence alignment algorithms
react
bioinformatics
algorithms
reactjs
smith-waterman
needleman-wunsch
alignment
needleman-wunsch-algorithm
needleman
smith-waterman-alignment
dot-plot
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May 28, 2021 - JavaScript
A global alignment algorithm used in bioinformatics to align protein of nucleotide sequences
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Mar 20, 2017 - MATLAB
Implementacja rozwiązania problemów z platformy: http://rosalind.info/problems/list-view/. Nazwa zadania z rosalinda jest nazwą programu. Opis zadań znajduje się na platformie rosalind.
python
bioinformatics
needleman-wunsch
python3
alignment
numba
genome-assembly
rosalind
semi-global-alignments
needleman-wunsch-algorithm
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Jun 4, 2020 - Python
aligning DNA and protein sequences using dynamic programming
protein-sequences
sequence-alignment
needleman-wunsch-algorithm
smith-waterman-algorithm
affine-gap-penalties
linear-gap-penalties
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Oct 10, 2020 - Jupyter Notebook
Techniques to analyze biological data generated by genome sequencing, proteomics, cell-wide measurements of gene expression changes. Algorithms for single/multiple sequence alignments/assembly. Search algorithms for sequence databases, phylogenetic tree construction algorithms. Algorithms for gene/promoter and protein structure prediction.
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Dec 18, 2020 - Python
Needleman-Wunsch Algorithm Implementation for Bioinformatics Class
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Jul 23, 2022 - Jupyter Notebook
NLP Course | Home Works | Fall 2021 | Dr. Behrooz Minaei
information-retrieval
hmm
regex
regular-expression
text-generation
imdb
naive-bayes-classifier
levenshtein-distance
language-model
bert
pos-tagging
cola
needleman-wunsch-algorithm
bigram-model
pcfg
cky-algorithm
add-one-smoothing
stsb
sst2
generative-vs-discriminative-model
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Mar 9, 2022 - Jupyter Notebook
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