🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
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Updated
Jun 26, 2024 - Python
🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
A Python package for drug discovery by analyzing causal paths on multiscale networks
A multi-reference network annotation tool to support omics analysis
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
A series of simulation codes used to emulate quantum-like networks in the simulation of emergent adaptive behavior, such as network synchronization, and relate the nature of the coupled harmonic oscillators with non-local behavior and chimera states in systems of quantum particles. Coding Used is based on mathematical modelling of transport in q…
Spicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data
A Bio2BEL package for DrugBank (https://www.drugbank.ca)
A machine learning tool to assign edges in protein-protein interaction networks with a function.
Integration of pathway-related information from Reactome in BEL
A Bio2BEL package for converting the Human Metabolite Database (HMDB) to BEL
Contextualization of protein-protein interaction databases by cell line
Simulating and analyzing dynamical network models
Modeling heme pathogenicity and pathway dysregulation in the context of hemolytic disorders
Bio-ModelChecker: Using Bounded Constraint Satisfaction to Seamlessly Integrate Observed Behavior with Prior Knowledge of Biological Networks
A (soon to be) lightweight Python package for accessing single-cell connectome networks with metadata.
A Bio2BEL package for converting the Gene Ontology (GO) to BEL
A machine learning tool to assign edges in protein-protein interaction networks with a function.
A PyBEL extension for interconversion with CX
A Bio2BEL package for converting ExPASy to BEL
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