QReadSelector is a subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
-
Updated
Aug 26, 2015 - Java
QReadSelector is a subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
Small tool to simulate AdapterContamination of NGS reads and evaluate the findings afterwards.
A Reliable and Fast Algorithm for Single Individual Haplotyping
CloudEC is a MapReduce-based algorithm for correcting errors in next-generation sequencing big data.
STATegra EMS: an Experiment Management System for complex next-generation omics experiments
Produce a report on a BAM file listing useful information
MiTools: yet another Next Generation Sequencing (NGS) data processing tool (based on MiLib)
A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms
A library for manipulating bioinformatics sequencing formats in Apache Spark.
A reference guided assembler of highly variable viral genomes
A program which can assembing .fasta file generated by Next Generation Sequencing(NGS) de novo using De Bruijn Graph Algorithm, and can also choose to map(BLAST) the contigs to a reference sequence
The mitochondrial workbench
microRNA validation using Spark framework
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
Apache Spark application for filtering and reporting clinically relevant variants
Add a description, image, and links to the ngs topic page so that developers can more easily learn about it.
To associate your repository with the ngs topic, visit your repo's landing page and select "manage topics."