Tools to assess the intrinsic nucleosome positioning from sequence information alone
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Updated
Apr 2, 2018 - C++
Tools to assess the intrinsic nucleosome positioning from sequence information alone
Code for "Comprehensive computational analysis of epigenetic descriptors affecting CRISPR-Cas9 off-target activity"
Statistical equilibrium models for computing occupancy of nucleosome and transcription-factors.
SRSF framework for nucleosome positioning analysis
This R package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region. Tested on ChIP-Seq peaks and nucleosome positions.
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RJMCMC: Genome-Wide Nucleosome Positioning in R
Bioconductor Package - Genome-Wide Nucleosome Positioning in R with an optimized section in C++
DNAcycP: a deep learning tool for DNA cyclizablity prediction
MNase-seq analysis pipeline using BWA and DANPOS2.
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
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