Biorepository application for tracking biospecimens.
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Updated
Dec 16, 2016 - Java
Biorepository application for tracking biospecimens.
A computational oncology application that analyzes and presents 3D MRI data of tumor growth in rat brains.
A more powerful analysis of tumor heterogeneity
TransVar - multiway annotator for precision medicine
Analyses on TCGA data - Part of bachelor thesis studying DNA methylation valleys in breast cancer
CAYA Analysis
Use of kmeans segmentation algorithm to classify dermis, epidermis and tumor infiltration.
CAYA Analysis
HarvardX: PH125.9x: Data Science - Capstone Breast Cancer Diagnosis Project
Using a Deep Learning CNN to detect acute lymphoblastic leukemia (ALL) from blood microscopy
R Package that extracts chemotherapy regimens from drug exposures in the OMOP CDM
Deep learning application to detect metastasis in sentinel lymph nodes
Development version of ph2rand, an R package for the design of randomized comparative phase II oncology trials
Used to obtain the results in "A stochastically curtailed two-arm randomised phase II trial design for binary outcomes" (DOI: 10.1002/pst.2067) by Law et al. Superseded by package "curtailment".
Clonal reconstruction from HTS data
Deep learning model to predict chemotherapeutic sensitivity based on transcriptomic data.
Tumors detections on MRI slice using semantic segmentation.
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