Predict plasmids from uncorrected long read data
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Updated
Dec 5, 2019 - Python
Predict plasmids from uncorrected long read data
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Long sequencing reads classifier
De novo clustering of long transcript reads into genes
SNP-Assisted SV Calling and Phasing Using ONT
Nextflow pipeline to process SARS-CoV-2 genomes by Nanopore Sequencing using ARTIC (https://github.com/artic-network/fieldbioinformatics) tools
A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries
PEPPER-Margin-DeepVariant
Technology agnostic long read analysis pipeline for transcriptomes
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
Wrapper to read fast5 and pod5 files.
Wrapper to read fast5, slow5, blow5 and pod5 files.
simON-reads ("Simulate Oxford Nanopore Reads") is a simple yet powerful tool to generate fastq files containing MiniON-like long reads
A novel ML-based binary classifier to tell viral and non-viral long reads apart in metagenomic samples.
Quality control plotting for long reads
Project to simulate simple Oxford Nanopore Technologies RNA signals
Long read based human genomic structural variation detection with cuteSV
This workflow uses Dorado, Samtools, Clair3, WhatHap and Modkit to extract a modification count table containing information for each relevant site.
Wastewater Enterovirus Typing Tool
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