mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data
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Updated
Jul 12, 2024 - Python
mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data
A Python script to map PDB ID + chain ID to UniProt ID.
A bioinformatics pipeline to identify the best available PDB structures for all available variants for specified genes of interest
Benchmarks for reading and interpreting mmCIF files
基于modeller官网脚本进行开发的序列比对脚本
Fixes mmCIF protein structure files
A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete
A complicated method to download all PDB sequences for free has been explained here. Also, a youtube video has been made for easier understanding. Check out the link in ReadME. The downloaded sequences are further cleaned for modeling purposes.
Modules for PDB Data parsing and Ramachandran Analysis.
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