Peak Calling algorithm for Chromatin-immunoprecipitation sequencing (ChIP-seq) data
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Updated
May 12, 2019 - Python
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peak-calling
Here are 8 public repositories matching this topic...
Peak classification with Deep Learning
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Jun 28, 2023 - Python
A small script to find peaks from the .bigWig file and output them in a .bed file.
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Feb 14, 2019 - Python
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
quality-control
annotation
chip-seq
atac-seq
bulk
cell-free-dna
peak-calling
differential-accessibility
differential-binding
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Updated
Nov 6, 2024 - Python
cell-free ChIP-seq pipeline
quality-control
snakemake
chip-seq
cell-free-dna
peak-calling
peak-annotation
cell-type-deconvolution
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Feb 7, 2024 - Python
ChIP-Seq processing pipeline on snakemake
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Oct 31, 2024 - Python
The ChIP-Seq peak calling algorithm using convolution neural networks
bioinformatics
tensorflow
gpu
docker-image
chip-seq
atac-seq
nvidia-docker
convolutional-neural-network
samtools
cnn-model
ngs-analysis
peak-calling
progressbar2
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Jan 18, 2021 - Python
Benchmarking ChIP-seq peak callers
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Updated
Dec 11, 2018 - Python
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