GUI for the C3 photosynthesis Farquhar, von Caemmerer & Berry model (1980)

Functions and a walkthrough to visualize common photosynthesis-irradiance relationships

Type an M x M matrix for your open quantum system Hamiltonian, and give a spectral density (analytic or numerical). FeynDyn gives the density matrix dynamics according to the Leggett-Caldeira bath or the Feynman-Vernon bath at any temperature. Can do up to 16 qubits (65536 levels) and infinitely many bath modes. Email nike@hpqc.org for the lates…

Platform for further development of the Arabidopsis core metabolic model

Integration of temperature-dependent constraints into a metabolic model of Arabidopsis thaliana

This code package simulates the time evolution of a multi-site electron transfer chain, with quantum yield, energy efficiency, and rate matrices as key outputs. The simulation models the rates and population dynamics of multi-step hopping with inter-cofactor separations and driving forces (ΔG) as input parameters.