lightweight GUI using wxPython that assembles a string to run ASTRAL from the command line.
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Updated
Feb 24, 2017 - Python
lightweight GUI using wxPython that assembles a string to run ASTRAL from the command line.
A Phylogenomic protein function prediction method based on weighting evolutionary distances
NGSphy: phylogenomic simulation of next-generation sequencing data
Automated processing and haplotype inference for double-barcoded PCR amplicons
Repository for different one-file scripts (Phylogenetics, Bioinformatics, Name managers, etc.)
A tool for divide-and-conquer tree estimation via a shared distance matrix
Parsimonious delimitation of large SNP datasets using the four gamete test
yes indeed
Phylogenomic resource to study the community ecology of the red algae
Hybridization Detection with Convolutional Neural Networks
Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
Species tree estimation from multi-copy gene trees
Reconstructing the species tree of palm subtribe Dypsidinae using the target capture loci of Heyduk et al. 2016 (doi: 10.1111/bij.12551)
This repository contains scripts that facilitate the manipulation of large amounts of data for phylogenomic analysis.
#Scripts to create Kraken2 database of PAFTOL V2.0 Angio353 genes. An excellent database for taxonomic identification of plants. #https://treeoflife.kew.org/ #https://github.com/DerrickWood/kraken2/wiki #Prior to using this script, download and install kraken2 and make sure it is working and in your PATH. #Make sure the location of the python sc…
PhyProbe is a bioinformatic pipeline designed to extract phylogenetic loci from Next-Generation Sequencing datasets including RNAseq, WGS, and Sequence/Target Capture methodologies (e.g., AHE, UCEs).
Official Implementation of QT-GILD
Pipeline to build phylogenetic trees using the Rank distance
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
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