A collection of bioinformatics tools for use with galaxy written at Quadram Institute
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Updated
Jun 4, 2024 - HTML
A collection of bioinformatics tools for use with galaxy written at Quadram Institute
Pathogen whole genome sequence (WGS) data analysis pipeline
A simple python plasmid map creator
DEPRECATED: Use Cenote-Taker 3 instead
code repo for mobileOG-db
A tool to batch-generate optimal DNA primers for Sanger sequencing. Output .xlsx file is directly compatible with IDT Oligo Entry.
A method for next-day high-throughput full plasmid sequencing from colonies
A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
repository-based plasmid design
Finding regions of similarity between plasmids
Plasmid Designer and DNA Editor
Converts gbk addgene plasmids to JSON form.
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
Software for prediction of plasmid sequences in metagenomic assemblies
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