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Jan 24, 2019 - Python
population-genomics
Here are 22 public repositories matching this topic...
This repository contains the pipeline script for Population Genetics Analysis built using SnakeMake
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Sep 30, 2022 - Python
Custom scripts for creating plots in Circos
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Feb 20, 2019 - Python
Small GATK alignment and variant calling pipeline using python
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Jul 18, 2022 - Python
Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog
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May 22, 2024 - Python
Using gnomad-browser's GraphQL updated API to retrieve total joint allele frequencies, exome/genome allele frequencies and homozygote counts as well as population specific numbers for a batch of variants.
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Jun 12, 2024 - Python
A tool to visualize the haplotype pattern and various information in excel.
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Dec 11, 2022 - Python
A repository for efficient population genomic analysis using Snakemake workflow.
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Jun 19, 2024 - Python
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.
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Jul 5, 2024 - Python
A python library to develop genomic data simulators
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Aug 29, 2023 - Python
Hedgehog genomic project using RAD paired-end reads
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Aug 16, 2016 - Python
Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files
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Jan 20, 2021 - Python
Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
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Apr 12, 2018 - Python
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
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Dec 9, 2022 - Python
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Feb 18, 2019 - Python
Python package for detecting positive selective sweeps using time-series genomics sampling data.
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Apr 9, 2024 - Python
Detecting Archaic Introgression from Population Genetic Data with S*
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Feb 15, 2024 - Python
Genome-wide scan for balancing selection using beta statistic
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Apr 26, 2023 - Python
群体遗传学分析中用到的script和skill等
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Jul 6, 2024 - Python
Automated and distributed population genetic model inference from allele frequency spectra
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Jul 16, 2024 - Python
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