Recombination Landscape Estimation using Recurrent Neural Networks
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Updated
Mar 13, 2024 - Python
Recombination Landscape Estimation using Recurrent Neural Networks
Genome-wide scan for balancing selection using beta statistic
PyPop: Python for Population Genomics
Python package for detecting positive selective sweeps using time-series genomics sampling data.
A tool to visualize the haplotype pattern and various information in excel.
Automated and distributed population genetic model inference from allele frequency spectra
生物信息学分析中用到的脚本
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
Detecting Archaic Introgression from Population Genetic Data with S*
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.
Small GATK alignment and variant calling pipeline using python
Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog
A python library to develop genomic data simulators
Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
Using gnomad-browser's GraphQL updated API to retrieve total joint allele frequencies, exome/genome allele frequencies and homozygote counts as well as population specific numbers for a batch of variants.
This repository contains the pipeline script for Population Genetics Analysis built using SnakeMake
Custom scripts for creating plots in Circos
A repository for efficient population genomic analysis using Snakemake workflow.
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