Building a fully automized pipeline for population genomic and conservation genomic analyses.

Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.

Code accompanying the manuscript on Genome variation in alpine bumblebees.

Population genomics for Kuaka Whenua Hou | Whenua Hou diving petrels and Kuaka | Common diving petrels

Scripts supporting the manuscript submitted to the Molecular Ecology Resources Special Issue 'Omics for species conservation'

Workflow for calling variants using data from 3000 Rice Genomes project

Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.

Presented here are the tools and strategies implemented for short-read SV discovery (Chapter 3), a population genomics study (Chapter 4) and genome graph construction (Chapter 5).

Code used to analyse WGS data of giraffe in Coimbra et al. 2021