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Jan 24, 2019 - Python
population-genomics
Here are 98 public repositories matching this topic...
Building a fully automized pipeline for population genomic and conservation genomic analyses.
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Apr 13, 2023 - Shell
R script employed in the manuscript 'Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii' to compute the frequency of pairwise genetic distances among individuals.
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Jul 24, 2020
This repository contains the pipeline script for Population Genetics Analysis built using SnakeMake
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Sep 30, 2022 - Python
Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.
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May 17, 2022 - Shell
Null models, performance testing, and power estimation with population simulations
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Nov 27, 2017 - HTML
Guides I wrote for labmates
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Feb 20, 2019
Code accompanying the manuscript on Genome variation in alpine bumblebees.
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Jun 11, 2021 - Shell
A modification to Sikora's admixr to make it more accesible
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Feb 20, 2019 - R
Genomics Commons
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Aug 18, 2023 - Jupyter Notebook
Population genomics for Kuaka Whenua Hou | Whenua Hou diving petrels and Kuaka | Common diving petrels
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Jun 20, 2024 - Shell
Various unix and perl scripts to deal with genetics data: prepare submission files, extract results, and so. Check their "help" to see usage
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Sep 3, 2021 - Perl
ancient population genomics
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Jan 10, 2020 - Scala
Scripts supporting the manuscript submitted to the Molecular Ecology Resources Special Issue 'Omics for species conservation'
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Dec 19, 2023 - Shell
Small GATK alignment and variant calling pipeline using python
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Jul 18, 2022 - Python
Script to summarize the results from several structure runs
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Jun 28, 2023 - R
Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog
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May 22, 2024 - Python
PopGenHelpR is an R package that estimates commonly used population genomic statistics and generates publication quality figures.
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May 9, 2024 - R
Using gnomad-browser's GraphQL updated API to retrieve total joint allele frequencies, exome/genome allele frequencies and homozygote counts as well as population specific numbers for a batch of variants.
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Jun 12, 2024 - Python
A Javascript chart for Linkage Disequilibrium (based on three.js)
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May 2, 2018 - JavaScript
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