protein-interaction
Here are 15 public repositories matching this topic...
Candidate OPC–endothelial cell interactors
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May 3, 2016 - Jupyter Notebook
defines the interface region of a protein complex making possible to calculate the i_rmsd between native and predicted structures following the CAPRI criteria
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May 11, 2018 - C
Protein-protein interaction identifier
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Sep 4, 2018
Reproduce bioinformatics analysis for the paper Meyer, K. et al., Cell, 2018.
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Nov 21, 2018
Evolution of protein interactomes across the tree of life
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Sep 30, 2019 - C++
Visually explore covariation in protein families
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Dec 8, 2019 - JavaScript
A deep learning library to rank protein complexes using graph neural networks
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Aug 26, 2020 - Python
Another needleplot for mutation data, used by ActiveDriverDB
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Nov 1, 2020 - JavaScript
An efficient implementation of the Seriation problem which 'finds a suitable linear order for a set of objects'. It has been used to order a network of proteins such that 'related' nodes are closer in the other.
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Jan 25, 2021 - C
Investigating Protein Interaction Networks with Python Visualizations
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May 7, 2021 - Jupyter Notebook
Using the interface residues as input (interface chain known), finding the interacting partners, node & edge types
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Aug 6, 2021 - Python
Protein-protein interaction network (with orthology) querying library
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Oct 19, 2022 - Clojure
Inference of couplings in proteins and RNAs from sequence variation
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Jan 21, 2023 - C
BEstimate, a Python module that systematically analyses guide RNA (gRNA) targetable sites across given sequences for given Base Editors, and functional and clinical effects of the potential edits on the resulting proteins.
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Jun 10, 2024 - Python
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